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LOC101928985 uncharacterized LOC101928985 [ Homo sapiens (human) ]

Gene ID: 101928985, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101928985
Gene description
uncharacterized LOC101928985
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928985 in Genome Data Viewer
Location:
11q23.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (115731945..115734762, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (115745090..115747907, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (115602663..115605480, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5545 Neighboring gene ribosomal protein L12 pseudogene 46 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504287-115504832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504833-115505378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115516252-115516892 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115526889-115527390 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115536377-115536876 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115535875-115536376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115540906-115541406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115541407-115541907 Neighboring gene long intergenic non-protein coding RNA 2698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115611894-115612436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115612437-115612979 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:115627599-115628798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115629978-115630512 Neighboring gene uncharacterized LOC107987165 Neighboring gene long intergenic non-protein coding RNA 900

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135066.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP002991, BC037868, BC057386

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    115731945..115734762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    115745090..115747907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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