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LINC01262 long intergenic non-protein coding RNA 1262 [ Homo sapiens (human) ]

Gene ID: 101928971, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01262provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1262provided by HGNC
Primary source
HGNC:HGNC:50275
See related
Ensembl:ENSG00000250739 AllianceGenome:HGNC:50275
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_l2_00021807
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q35.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (189659606..189661486)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (193019451..193021331)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (190580760..190582640)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:190400698-190401256 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:190405217-190405972 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:190405973-190406728 Neighboring gene heat shock protein 90 alpha family class A member 4, pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190471799-190472998 Neighboring gene uncharacterized LOC105377615 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:190523074-190524273 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190606699-190607898 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190608412-190609611 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190615457-190616656 Neighboring gene uncharacterized LOC105377616 Neighboring gene RNA, U1 small nuclear 51, pseudogene Neighboring gene uncharacterized LOC124900882 Neighboring gene FRG1 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing. Soreq L, et al. PLoS Comput Biol, 2014 Mar. PMID 24651478, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121679.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018687
    Related
    ENST00000513681.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    189659606..189661486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187679.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    307218..309097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    193019451..193021331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases