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LINC02671 long intergenic non-protein coding RNA 2671 [ Homo sapiens (human) ]

Gene ID: 101928887, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02671provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2671provided by HGNC
Primary source
HGNC:HGNC:54158
See related
Ensembl:ENSG00000224714 AllianceGenome:HGNC:54158
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02671 in Genome Data Viewer
Location:
10q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (64901136..64924518, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (65759056..65782433, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (66660894..66684276, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984239 Neighboring gene Sharpr-MPRA regulatory region 14987 Neighboring gene cytochrome P450 family 2 subfamily C member 61, pseudogene Neighboring gene MPRA-validated peak974 silencer Neighboring gene MPRA-validated peak975 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:66569879-66570556 Neighboring gene uncharacterized LOC105378336 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14285 Neighboring gene annexin A2 pseudogene 3 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14356 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14377 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14431 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14444 Neighboring gene MPRA-validated peak978 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14489 Neighboring gene uncharacterized LOC102724863 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14563 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14639 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14760 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14780 Neighboring gene NIMA-related kinase 4 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134456.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024600, BC050028
    Related
    ENST00000425902.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    64901136..64924518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    65759056..65782433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases