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LOC101928882 uncharacterized LOC101928882 [ Homo sapiens (human) ]

Gene ID: 101928882, updated on 27-Aug-2024

Summary

Gene symbol
LOC101928882
Gene description
uncharacterized LOC101928882
See related
Ensembl:ENSG00000285336
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in ovary (RPKM 1.9), testis (RPKM 1.5) and 10 other tissues See more
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Genomic context

Location:
3q26.33
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (180707589..180870178, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (183509451..183671953, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (180425377..180587966, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14926 Neighboring gene tetratricopeptide repeat domain 14 Neighboring gene coiled-coil domain 39 molecular ruler complex subunit Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20877 Neighboring gene CCDC39 antisense RNA 1 Neighboring gene VISTA enhancer hs258 Neighboring gene VISTA enhancer hs655 Neighboring gene RNA, 7SL, cytoplasmic 229, pseudogene Neighboring gene RNF13 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:180522519-180523056 Neighboring gene FLYWCH-type zinc finger 1 pseudogene 1 Neighboring gene ACTB pseudogene 16 Neighboring gene uncharacterized LOC105374240 Neighboring gene uncharacterized LOC124909466 Neighboring gene ribosomal protein L32 pseudogene 10 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:180629449-180630104 Neighboring gene Sharpr-MPRA regulatory region 7910 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14927 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:180641841-180642341 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14928 Neighboring gene FMR1 autosomal homolog 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.
EBI GWAS Catalog
Genome-wide association study identifies five new schizophrenia loci.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109986.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108734, BC047103
    Related
    ENST00000485055.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    180707589..180870178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    183509451..183671953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)