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LINC02997 long intergenic non-protein coding RNA 2997 [ Homo sapiens (human) ]

Gene ID: 101928858, updated on 10-Oct-2023

Summary

Official Symbol
LINC02997provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2997provided by HGNC
Primary source
HGNC:HGNC:56113
See related
Ensembl:ENSG00000249364
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in liver (RPKM 1.5), testis (RPKM 0.4) and 1 other tissue See more
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Genomic context

Location:
5q13.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (67793213..67801058)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (68615455..68623300)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (67089041..67096886)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2242 Neighboring gene BCL9 pseudogene 1 Neighboring gene mitochondrial ribosomal protein L39 pseudogene Neighboring gene Sharpr-MPRA regulatory region 2818 Neighboring gene Sharpr-MPRA regulatory region 2346 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67075540-67076172 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67076173-67076803 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16071 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67113847-67114545 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:67140720-67141282 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67185144-67185715 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67185716-67186286 Neighboring gene uncharacterized LOC105379007 Neighboring gene uncharacterized LOC107986420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22627 Neighboring gene uncharacterized LOC124900990

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130779.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106798
    Related
    ENST00000513234.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    67793213..67801058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    68615455..68623300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)