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LINC02535 long intergenic non-protein coding RNA 2535 [ Homo sapiens (human) ]

Gene ID: 101928820, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02535provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2535provided by HGNC
Primary source
HGNC:HGNC:53569
See related
Ensembl:ENSG00000234155 AllianceGenome:HGNC:53569
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in duodenum (RPKM 10.7), small intestine (RPKM 5.6) and 4 other tissues See more
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Genomic context

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See LINC02535 in Genome Data Viewer
Location:
6q14.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (85387219..85404802, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (86604337..86621920, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (86096937..86114520, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr6:85992886-85993121 Neighboring gene keratin 18 pseudogene 30 Neighboring gene karyopherin subunit alpha 3 pseudogene Neighboring gene keratin 18 pseudogene 64 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17364 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17365 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:86112847-86113639 Neighboring gene TPT1 pseudogene 6 Neighboring gene deoxyuridine triphosphatase pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LINC02535 promotes cell growth in poorly differentiated gastric cancer. Wu J, et al. J Clin Lab Anal, 2021 Aug. PMID 34125981, Free PMC Article
  2. LncRNA LINC02535 Induces Colorectal Adenocarcinoma Progression via Modulating miR-30d-5p/CHD1. Li J, et al. Mol Biotechnol, 2023 Aug. PMID 36577835
  3. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. Oshikawa M, et al. DNA Res, 2008 Jun 30. PMID 18487259, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA LINC02535 Induces Colorectal Adenocarcinoma Progression via Modulating miR-30d-5p/CHD1.
    Title: LncRNA LINC02535 Induces Colorectal Adenocarcinoma Progression via Modulating miR-30d-5p/CHD1.
  2. LINC02535 promotes cell growth in poorly differentiated gastric cancer.
    Title: LINC02535 promotes cell growth in poorly differentiated gastric cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134633.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AB371547, AK024998, AL135903

  2. NR_134634.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks multiple 5' exons, contains an alternate 5' exon, and is shorter than variant 1.
    Source sequence(s)
    AK024998, AL135903
    Related
    ENST00000455071.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    85387219..85404802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    86604337..86621920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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