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LINC01741 long intergenic non-protein coding RNA 1741 [ Homo sapiens (human) ]

Gene ID: 101928778, updated on 10-Oct-2023

Summary

Official Symbol
LINC01741provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1741provided by HGNC
Primary source
HGNC:HGNC:52529
See related
Ensembl:ENSG00000236720 AllianceGenome:HGNC:52529
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01741 in Genome Data Viewer
Location:
1q25.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (177700524..177710330)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (177055274..177065082)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (177669659..177679465)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene BMP/retinoic acid inducible neural specific 2 Neighboring gene uncharacterized LOC105371625 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:177224616-177225815 Neighboring gene long intergenic non-protein coding RNA 1645 Neighboring gene NANOG hESC enhancer GRCh37_chr1:177624802-177625303 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:177763543-177764294 Neighboring gene CRYZL2P-SEC16B readthrough Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:177883789-177884988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:177905975-177906476 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:177928928-177929429 Neighboring gene SEC16 homolog B, endoplasmic reticulum export factor Neighboring gene MPRA-validated peak475 silencer Neighboring gene crystallin zeta like 2, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110722.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC031234
    Related
    ENST00000427173.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    177700524..177710330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    177055274..177065082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)