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ETDA embryonic testis differentiation homolog A [ Homo sapiens (human) ]

Gene ID: 101928677, updated on 8-Mar-2024

Summary

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Official Symbol
ETDAprovided by HGNC
Official Full Name
embryonic testis differentiation homolog Aprovided by HGNC
Primary source
HGNC:HGNC:53449
See related
Ensembl:ENSG00000238210 AllianceGenome:HGNC:53449
Gene type
protein coding
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
Orthologs
all
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Genomic context

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Location:
Xq26.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (135251861..135253584)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (133577680..133579403)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134386009..134387531)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene cancer/testis antigen 55 pseudogene Neighboring gene uncharacterized LOC124905298 Neighboring gene zinc finger protein 449 pseudogene Neighboring gene zinc finger protein 75D Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:134407073-134407615 Neighboring gene tigger transposable element derived 7 pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:134436208-134436836 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:134436837-134437464 Neighboring gene embryonic testis differentiation homolog C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

General protein information

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Preferred Names
embryonic testis differentiation homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355522.1 → NP_001342451.1  embryonic testis differentiation homolog A

    Status: INFERRED

    Source sequence(s)
    AC234771
    Consensus CDS
    CCDS87782.1
    UniProtKB/Swiss-Prot
    P0DPP9, Q3ZM63
    Related
    ENSP00000490055.1, ENST00000427686.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    135251861..135253584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024452324.2 → XP_024308092.2  embryonic testis differentiation homolog A isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    133577680..133579403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054326358.1 → XP_054182333.1  embryonic testis differentiation homolog A isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases