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LINC01775 long intergenic non-protein coding RNA 1775 [ Homo sapiens (human) ]

Gene ID: 101928602, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01775provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1775provided by HGNC
Primary source
HGNC:HGNC:52565
See related
Ensembl:ENSG00000267201 AllianceGenome:HGNC:52565
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01775 in Genome Data Viewer
Location:
19p13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (2458937..2462185, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (2434729..2437977, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (2458935..2462183, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 9 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:2426331-2427074 Neighboring gene origin of replication adjacent to lamin B2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:2427075-2427820 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:2433582-2434270 Neighboring gene translocase of inner mitochondrial membrane 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:2441143-2441644 Neighboring gene lamin B2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:2441645-2442144 Neighboring gene microRNA 7108 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:2452980-2453594 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:2453595-2454209 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:2454266-2454976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:2454977-2455685 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9790 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9791 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9792 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9793 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13686 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9794 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9795 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13687 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:2476197-2476784 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:2476785-2477374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13693 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:2479439-2479940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:2479941-2480440 Neighboring gene growth arrest and DNA damage inducible beta Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9797 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9798 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9799 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:2490859-2491360 Neighboring gene uncharacterized LOC124904614 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:2494323-2495030

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC005624.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005624, BC040839
    Related
    ENST00000587826.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    2458937..2462185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    2434729..2437977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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