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LOC101928570 uncharacterized LOC101928570 [ Homo sapiens (human) ]

Gene ID: 101928570, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101928570
Gene description
uncharacterized LOC101928570
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928570 in Genome Data Viewer
Location:
6q14.1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (77068664..77317479, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (78234422..78494930, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377861 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:77413212-77414041 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_94632 Neighboring gene NANOG hESC enhancer GRCh37_chr6:77418612-77419138 Neighboring gene uncharacterized LOC105377862 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_94698 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:77559139-77559770 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:77585912-77586484 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_94761 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_94782 Neighboring gene uncharacterized LOC124901345 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95009 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95029 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:77883629-77884129 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95189 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95197 Neighboring gene uncharacterized LOC105377864 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:78172074-78172218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24764 Neighboring gene uncharacterized LOC124901493 Neighboring gene 5-hydroxytryptamine receptor 1B Neighboring gene ribosomal protein S6 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    77068664..77317479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_241864.5 RNA Sequence

  2. XR_007059650.1 RNA Sequence

  3. XR_001744206.2 RNA Sequence

  4. XR_001744207.2 RNA Sequence

  5. XR_001744205.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    78234422..78494930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076908.1 RNA Sequence

  2. XR_007076906.1 RNA Sequence

  3. XR_007076907.1 RNA Sequence

  4. XR_007076909.1 RNA Sequence

  5. XR_007076905.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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