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SEPTIN7-DT SEPTIN7 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101928545, updated on 10-Oct-2023

Summary

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Official Symbol
SEPTIN7-DTprovided by HGNC
Official Full Name
SEPTIN7 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:51153
See related
AllianceGenome:HGNC:51153
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SEPT7-AS1; SEPTIN7-AS1
Expression
Broad expression in testis (RPKM 1.5), thyroid (RPKM 1.2) and 24 other tissues See more
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Genomic context

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Location:
7p14.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (35754964..35800625, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (35895962..35941626, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (35794574..35840235, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3013 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25841 Neighboring gene uncharacterized LOC124901615 Neighboring gene glycine cleavage system protein H (aminomethyl carrier) pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25842 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:35840081-35840704 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18097 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18098 Neighboring gene septin 7 Neighboring gene gem-associated protein 7-like Neighboring gene RNA, U6 small nuclear 1085, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • SEPT7 antisense RNA 1 (head to head)

Clone Names

  • AC007551.3, DKFZp779B0967

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120511.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BX502136, DA298199, DA751237

  2. NR_120512.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' terminal exon and lacks an exon in the 3' region, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC007551, BX502136, DA751237

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    35754964..35800625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    35895962..35941626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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