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LINC01494 long intergenic non-protein coding RNA 1494 [ Homo sapiens (human) ]

Gene ID: 101928537, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01494provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1494provided by HGNC
Primary source
HGNC:HGNC:51152
See related
Ensembl:ENSG00000228135 AllianceGenome:HGNC:51152
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
2q35
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (218900814..218930637, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (219389182..219419006, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (219765536..219795359, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Wnt family member 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12328 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12329 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12330 Neighboring gene Wnt family member 10A Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12332 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12333 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17131 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:219757282-219757864 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17134 Neighboring gene uncharacterized LOC105373882 Neighboring gene Sharpr-MPRA regulatory region 8081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17135 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12336 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17136 Neighboring gene uncharacterized LOC124906119 Neighboring gene RNA, U6 small nuclear 642, pseudogene Neighboring gene uncharacterized LOC124907984 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12338 Neighboring gene keratin 8 pseudogene 30 Neighboring gene cyclin dependent kinase 5 regulatory subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC073128.10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110238.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC038542, BI488698
    Related
    ENST00000419511.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    218900814..218930637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    219389182..219419006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases