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LOC101928505 uncharacterized LOC101928505 [ Homo sapiens (human) ]

Gene ID: 101928505, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101928505
Gene description
uncharacterized LOC101928505
See related
Ensembl:ENSG00000287709
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in liver (RPKM 4.0) and fat (RPKM 0.2) See more
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Genomic context

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Location:
5q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (57650660..57670989)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (58479395..58499725)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (56946487..56966816)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene enriched in melanoma 3 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:56790121-56791320 Neighboring gene actin beta like 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16032 Neighboring gene uncharacterized LOC124901182 Neighboring gene lncRNA SMARCA2 (BRM) associated Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:56937789-56938367 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:56988450-56989649 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:56994597-56995101 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:57011915-57013114 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:57030843-57032042 Neighboring gene Sharpr-MPRA regulatory region 14061 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:57131079-57131587 Neighboring gene Sharpr-MPRA regulatory region 14379 Neighboring gene NANOG hESC enhancer GRCh37_chr5:57141460-57142040 Neighboring gene long intergenic non-protein coding RNA 2225 Neighboring gene Sharpr-MPRA regulatory region 13165 Neighboring gene uncharacterized LOC124901183 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:57363636-57364835

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104668.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008780
    Related
    ENST00000690177.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    57650660..57670989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    58479395..58499725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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