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MAP3K5-AS1 MAP3K5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928461, updated on 10-Oct-2023

Summary

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Official Symbol
MAP3K5-AS1provided by HGNC
Official Full Name
MAP3K5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40358
See related
Ensembl:ENSG00000234263 AllianceGenome:HGNC:40358
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 8.7) See more
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Genomic context

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Location:
6q23.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (136629114..136648198)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (137817297..137836371)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (136950252..136969336)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:136870396-136870934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17572 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17573 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:136871473-136872010 Neighboring gene RN7SK pseudogene 299 Neighboring gene MPRA-validated peak6148 silencer Neighboring gene MAP7 antisense RNA 1 Neighboring gene mitogen-activated protein kinase kinase kinase 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25115 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:136933733-136934303 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:136934304-136934873 Neighboring gene RNA, 5S ribosomal pseudogene 219 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25116 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25117 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25118 Neighboring gene uncharacterized LOC124901410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25119 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25121 Neighboring gene Sharpr-MPRA regulatory region 8718 Neighboring gene Sharpr-MPRA regulatory region 14394 Neighboring gene MAP3K5 antisense RNA 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125858.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI138300, BX093515, BX398118
    Related
    ENST00000432477.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    136629114..136648198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    137817297..137836371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases