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LINC01700 long intergenic non-protein coding RNA 1700 [ Homo sapiens (human) ]

Gene ID: 101928435, updated on 17-Sep-2024

Summary

Official Symbol
LINC01700provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1700provided by HGNC
Primary source
HGNC:HGNC:52488
See related
Ensembl:ENSG00000232837 AllianceGenome:HGNC:52488
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01700 in Genome Data Viewer
Location:
21q22.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (38974429..38977774, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (37359092..37362437, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (40346355..40349700, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928398 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13317 Neighboring gene ETS2 antisense RNA 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:40275087-40276286 Neighboring gene CAGE-defined mid-level expression enhancer in LOC400867 intron Neighboring gene ribosomal protein SA pseudogene 64 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40286344-40286844 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40286845-40287345 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40316387-40317085 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:40318461-40318589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18464 Neighboring gene VISTA enhancer hs1516 Neighboring gene long intergenic non-protein coding RNA 2940 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18465 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40393817-40394317 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40395325-40395890 Neighboring gene long intergenic non-protein coding RNA 2943 Neighboring gene Sharpr-MPRA regulatory region 7751 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40434218-40434800 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:40447061-40447847

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109962.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF064858, BC034606
    Related
    ENST00000433952.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    38974429..38977774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    37359092..37362437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)