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LOC101928409 uncharacterized LOC101928409 [ Homo sapiens (human) ]

Gene ID: 101928409, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101928409
Gene description
uncharacterized LOC101928409
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in heart (RPKM 3.4), gall bladder (RPKM 2.4) and 11 other tissues See more
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Genomic context

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See LOC101928409 in Genome Data Viewer
Location:
4q34.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (173508117..173514742)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (176840982..176850746)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene stimulator of chondrogenesis 1 Neighboring gene VISTA enhancer hs2501 Neighboring gene RNA, U6 small nuclear 1096, pseudogene Neighboring gene uncharacterized LOC112267917 Neighboring gene NANOG hESC enhancer GRCh37_chr4:174410607-174411181 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22160 Neighboring gene uncharacterized LOC124900815 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:174439311-174440510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:174445895-174446436 Neighboring gene HAND2 antisense RNA 1 Neighboring gene heart and neural crest derivatives expressed 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    173508117..173514742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939466.3 RNA Sequence

  2. XR_939467.3 RNA Sequence

  3. XR_001741459.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    176840982..176850746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075152.1 RNA Sequence

  2. XR_007075154.1 RNA Sequence

  3. XR_007075153.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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