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LINC02543 long intergenic non-protein coding RNA 2543 [ Homo sapiens (human) ]

Gene ID: 101928406, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02543provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2543provided by HGNC
Primary source
HGNC:HGNC:53577
See related
AllianceGenome:HGNC:53577
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02543 in Genome Data Viewer
Location:
6p22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (15994944..16000491)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (15867145..15872688)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (15995175..16000722)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex subunit 3 pseudogene 5 Neighboring gene uncharacterized LOC105374949 Neighboring gene Sharpr-MPRA regulatory region 8871 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24095 Neighboring gene Sharpr-MPRA regulatory region 12955 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16954 Neighboring gene CRISPRi-validated cis-regulatory element chr6.836 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:16064773-16065514 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:16065515-16066255 Neighboring gene Sharpr-MPRA regulatory region 5392 Neighboring gene MDH1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24096 Neighboring gene myosin regulatory light chain interacting protein Neighboring gene microRNA 4639

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183311.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365265

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    15994944..16000491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    15867145..15872688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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