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LOC101928344 uncharacterized LOC101928344 [ Homo sapiens (human) ]

Gene ID: 101928344, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101928344
Gene description
uncharacterized LOC101928344
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in bone marrow (RPKM 19.6), testis (RPKM 10.3) and 22 other tissues See more
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Genomic context

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See LOC101928344 in Genome Data Viewer
Location:
19p13.3
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (204014..246532, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (155272..191101, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1002 Neighboring gene capicua transcriptional repressor pseudogene 19 Neighboring gene RNA, U6 small nuclear 1076, pseudogene Neighboring gene general transcription factor IIi pseudogene 19 Neighboring gene uncharacterized LOC107985295 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9596 Neighboring gene MPRA-validated peak3201 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:278731-279381 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:281525-282216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:282217-282907 Neighboring gene vomeronasal 2 receptor 11 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:287125-287626 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:287627-288126 Neighboring gene hESC enhancers GRCh37_chr19:289901-290599 and GRCh37_chr19:290600-291297 Neighboring gene phospholipid phosphatase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    204014..246532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002958438.2 RNA Sequence

  2. XR_007067060.1 RNA Sequence

  3. XR_007067059.1 RNA Sequence

  4. XR_007067069.1 RNA Sequence

  5. XR_007067068.1 RNA Sequence

  6. XR_007067070.1 RNA Sequence

  7. XR_007067064.1 RNA Sequence

  8. XR_007067061.1 RNA Sequence

  9. XR_007067063.1 RNA Sequence

  10. XR_002958445.2 RNA Sequence

  11. XR_007067067.1 RNA Sequence

  12. XR_007067062.1 RNA Sequence

  13. XR_002958443.2 RNA Sequence

  14. XR_002958444.2 RNA Sequence

  15. XR_007067066.1 RNA Sequence

  16. XR_002958441.2 RNA Sequence

  17. XR_007067065.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    155272..191101 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088778.1 RNA Sequence

  2. XR_007088777.1 RNA Sequence

  3. XR_007088776.1 RNA Sequence

  4. XR_007088779.1 RNA Sequence

  5. XR_007088788.1 RNA Sequence

  6. XR_007088775.1 RNA Sequence

  7. XR_007088785.1 RNA Sequence

  8. XR_007088789.1 RNA Sequence

  9. XR_007088783.1 RNA Sequence

  10. XR_007088784.1 RNA Sequence

  11. XR_007088781.1 RNA Sequence

  12. XR_007088787.1 RNA Sequence

  13. XR_007088782.1 RNA Sequence

  14. XR_007088786.1 RNA Sequence

  15. XR_007088780.1 RNA Sequence

Nucleotide Protein
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