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LINC02530 long intergenic non-protein coding RNA 2530 [ Homo sapiens (human) ]

Gene ID: 101928309, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02530provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2530provided by HGNC
Primary source
HGNC:HGNC:53556
See related
Ensembl:ENSG00000234015 AllianceGenome:HGNC:53556
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6p24.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (12582768..12585404, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (12451175..12453813, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (12583000..12585636, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374931 Neighboring gene RN7SK pseudogene 293 Neighboring gene Sharpr-MPRA regulatory region 4078 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:12483687-12484886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:12494607-12495106 Neighboring gene ribosomal protein L15 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 7011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24019 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16923 Neighboring gene NANOG hESC enhancer GRCh37_chr6:12672164-12672665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:12673381-12673882 Neighboring gene uncharacterized LOC107984015 Neighboring gene uncharacterized LOC124901503 Neighboring gene uncharacterized LOC105374935 Neighboring gene phosphatase and actin regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149140.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591068, BC042564
    Related
    ENST00000457945.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    12582768..12585404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    12451175..12453813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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