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ZPLD2P zona pellucida like domain containing 2, pseudogene [ Homo sapiens (human) ]

Gene ID: 101928303, updated on 31-Oct-2024

Summary

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Official Symbol
ZPLD2Pprovided by HGNC
Official Full Name
zona pellucida like domain containing 2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:54510
See related
Ensembl:ENSG00000293494 AllianceGenome:HGNC:54510
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 4.7), kidney (RPKM 3.3) and 7 other tissues See more
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Genomic context

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See ZPLD2P in Genome Data Viewer
Location:
1p36.11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (26225320..26229840)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (26062759..26067279)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (26551811..26556331)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ARF like GTPase 16 pseudogene Neighboring gene uncharacterized LOC124903882 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:26551137-26551642 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:26551643-26552147 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:26556108-26556276 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 483 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 484 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 485 Neighboring gene centrosomal protein 85 Neighboring gene uncharacterized LOC124904684 Neighboring gene MPRA-validated peak133 silencer Neighboring gene mitochondrial ribosomal protein S6 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110698.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355877, BC030768
    Related
    ENST00000451482.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    26225320..26229840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    26062759..26067279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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