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LINC01787 long intergenic non-protein coding RNA 1787 [ Homo sapiens (human) ]

Gene ID: 101928241, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01787provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1787provided by HGNC
Primary source
HGNC:HGNC:52576
See related
Ensembl:ENSG00000231987 AllianceGenome:HGNC:52576
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1p21.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (96254069..96374125, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (96101995..96222320, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (96719625..96839681, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96468667-96469209 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96469210-96469751 Neighboring gene long intergenic non-protein coding RNA 2790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:96689610-96690110 Neighboring gene RNA, U1 small nuclear 130, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96724805-96725445 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:96828291-96829490 Neighboring gene secretory carrier membrane protein 1 pseudogene Neighboring gene ubiquitin conjugating enzyme E2 W pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110693.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK056049, AL138801
    Related
    ENST00000435311.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    96254069..96374125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    96101995..96222320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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