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LINC01280 long intergenic non-protein coding RNA 1280 [ Homo sapiens (human) ]

Gene ID: 101928232, updated on 10-Oct-2023

Summary

Official Symbol
LINC01280provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1280provided by HGNC
Primary source
HGNC:HGNC:50336
See related
AllianceGenome:HGNC:50336
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01280 in Genome Data Viewer
Location:
2q35
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (216589993..216606938, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (217072380..217089338, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (217454716..217471661, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928156 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:217390604-217391496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17101 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:217417655-217418166 Neighboring gene uncharacterized LOC101928180 Neighboring gene uncharacterized LOC105373871 Neighboring gene uncharacterized LOC124907976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:217467676-217468397 Neighboring gene Sharpr-MPRA regulatory region 7775 Neighboring gene proteasome subunit beta 3 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:217485350-217485850 Neighboring gene uncharacterized LOC124907977

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110392.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073321

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    216589993..216606938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    217072380..217089338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)