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PSMD7-DT PSMD7 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101928035, updated on 17-Sep-2024

Summary

Official Symbol
PSMD7-DTprovided by HGNC
Official Full Name
PSMD7 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53056
See related
Ensembl:ENSG00000261404 AllianceGenome:HGNC:53056
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

See PSMD7-DT in Genome Data Viewer
Location:
16q23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (74192392..74215521, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (80010164..80033298, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (74226291..74249420, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984856 Neighboring gene Sharpr-MPRA regulatory region 11065 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:74060166-74060769 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:74062668-74063546 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:74103850-74104033 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7695 Neighboring gene uncharacterized LOC124903722 Neighboring gene MPRA-validated peak2636 silencer Neighboring gene peptidylprolyl isomerase A pseudogene 49 Neighboring gene H3K27ac hESC enhancers GRCh37_chr16:74329945-74330836 and GRCh37_chr16:74330837-74331726 Neighboring gene proteasome 26S subunit, non-ATPase 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104657.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009120, BC043527
    Related
    ENST00000568137.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    74192392..74215521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    80010164..80033298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)