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LOC101928034 uncharacterized LOC101928034 [ Homo sapiens (human) ]

Gene ID: 101928034, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101928034
Gene description
uncharacterized LOC101928034
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lung (RPKM 6.7), bone marrow (RPKM 5.4) and 21 other tissues See more
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Genomic context

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Location:
1q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (153545742..153551769)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (152682998..152689025)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (153518218..153524245)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904423 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:153508457-153509092 Neighboring gene S100 calcium binding protein A6 Neighboring gene S100 calcium binding protein A5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153517191-153517771 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153517772-153518352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:153521261-153521822 Neighboring gene Sharpr-MPRA regulatory region 14368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:153522386-153522947 Neighboring gene S100 calcium binding protein A4 Neighboring gene S100 calcium binding protein A3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153536677-153537434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153537435-153538192 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:153538345-153539544 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153539708-153540464 Neighboring gene S100 calcium binding protein A2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1749 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153546964-153547744 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153547745-153548525 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153550484-153551282 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153555559-153556483 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:153577506-153578461 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:153580804-153582003 Neighboring gene S100 calcium binding protein A16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125947.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK307246, DA480135

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    153545742..153551769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    152682998..152689025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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