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KCNIP1-OT1 KCNIP1 overlapping transcript 1 [ Homo sapiens (human) ]

Gene ID: 101928033, updated on 10-Oct-2023

Summary

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Official Symbol
KCNIP1-OT1provided by HGNC
Official Full Name
KCNIP1 overlapping transcript 1provided by HGNC
Primary source
HGNC:HGNC:40320
See related
Ensembl:ENSG00000253647 AllianceGenome:HGNC:40320
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTD-2270F17.1
Expression
Broad expression in endometrium (RPKM 2.8), prostate (RPKM 2.7) and 14 other tissues See more
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Genomic context

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Location:
5q35.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (170389493..170422844)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (170928328..170961675)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (169816497..169849848)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:169757700-169758899 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169759699-169760548 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169760549-169761396 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23610 Neighboring gene long intergenic non-protein coding RNA 1366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169788107-169788607 Neighboring gene potassium voltage-gated channel interacting protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169814486-169814986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169814987-169815487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169817412-169817912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169817913-169818413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169818666-169819166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169819167-169819667 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23611 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169865238-169866195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169911974-169912474 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:169913290-169913456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169962091-169962591 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169979309-169979878 Neighboring gene MPRA-validated peak5573 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:170024020-170025219 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:170038765-170039501 Neighboring gene uncharacterized LOC124901132 Neighboring gene Sharpr-MPRA regulatory region 9502 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170052347-170052846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170054080-170054580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170054581-170055081 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170059758-170060339 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170063109-170063858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170065509-170066304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170066305-170067098 Neighboring gene KCNIP1 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109899.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027306, AC134820
    Related
    ENST00000518387.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    170389493..170422844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    170928328..170961675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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