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LINC01809 long intergenic non-protein coding RNA 1809 [ Homo sapiens (human) ]

Gene ID: 101928031, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01809provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1809provided by HGNC
Primary source
HGNC:HGNC:52612
See related
Ensembl:ENSG00000232548 AllianceGenome:HGNC:52612
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2p11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (83522814..83523482)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (83523863..83524531)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (83749938..83750606)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene zinc finger protein 141-like Neighboring gene uncharacterized LOC105374833 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:83510083-83510955 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:83510956-83511827 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:83743893-83745092 Neighboring gene uncharacterized LOC105374834 Neighboring gene ribosomal protein L37 pseudogene 10 Neighboring gene RNA, U6 small nuclear 1312, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC010744.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146482.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC039486
    Related
    ENST00000448431.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    83522814..83523482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    83523863..83524531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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