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LINC01985 long intergenic non-protein coding RNA 1985 [ Homo sapiens (human) ]

Gene ID: 101928015, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01985provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1985provided by HGNC
Primary source
HGNC:HGNC:52816
See related
Ensembl:ENSG00000227260 AllianceGenome:HGNC:52816
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01985 in Genome Data Viewer
Location:
3p24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (30518868..30527193)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (30521312..30529649)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (30560360..30568685)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909358 Neighboring gene small nucleolar RNA U3 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:30383595-30384794 Neighboring gene GATA motif-containing MPRA enhancer 299 Neighboring gene uncharacterized LOC101927995 Neighboring gene Sharpr-MPRA regulatory region 15230 Neighboring gene uncharacterized LOC105377013 Neighboring gene Sharpr-MPRA regulatory region 9798 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19624 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:30590862-30591747 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:30592706-30593238 Neighboring gene NANOG hESC enhancer GRCh37_chr3:30593324-30593858 Neighboring gene HNF1 motif-containing MPRA enhancer 129 Neighboring gene translation initiation factor IF-2-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14158 Neighboring gene transforming growth factor beta receptor 2 Neighboring gene KLHL25 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC116035.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147054.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC116035
    Related
    ENST00000657930.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    30518868..30527193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    30521312..30529649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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