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LINC01572 long intergenic non-protein coding RNA 1572 [ Homo sapiens (human) ]

Gene ID: 101927957, updated on 8-Mar-2024

Summary

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Official Symbol
LINC01572provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1572provided by HGNC
Primary source
HGNC:HGNC:51385
See related
Ensembl:ENSG00000261008 AllianceGenome:HGNC:51385
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

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Location:
16q22.2
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (72280902..72664970, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (78097218..78481445, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (72314801..72698869, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene polyamine modulated factor 1 binding protein 1 Neighboring gene uncharacterized LOC105371341 Neighboring gene VISTA enhancer hs22 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:72257113-72258312 Neighboring gene uncharacterized LOC124903720 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:72319061-72319706 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:72324412-72325611 Neighboring gene MYC binding protein pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44023 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44041 Neighboring gene VISTA enhancer hs108 Neighboring gene uncharacterized LOC124903812 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44094 Neighboring gene uncharacterized LOC124903718 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44118 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11096 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:72660846-72661404 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11100 Neighboring gene Sharpr-MPRA regulatory region 2952 Neighboring gene ZFHX3 antisense RNA 1 Neighboring gene VISTA enhancer hs20 Neighboring gene RNA, U7 small nuclear 90 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:72756067-72756616 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:72756617-72757164 Neighboring gene keratin 18 pseudogene 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA LINC-01572:28 inhibits granulosa cell growth via a decrease in p27 (Kip1) degradation in patients with polycystic ovary syndrome. Zhao J, et al. EBioMedicine, 2018 Oct. PMID 30293818, Free PMC Article
  2. Identification and Functional Characterization of Two Noncoding RNAs Transcribed from Putative Active Enhancers in Hepatocellular Carcinoma. Lee YE, et al. Mol Cells, 2021 Sep 30. PMID 34588321, Free PMC Article
  3. A genome-wide association study finds genetic variants associated with neck or shoulder pain in UK Biobank. Meng W, et al. Hum Mol Genet, 2020 May 28. PMID 32246137, Free PMC Article
  4. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  5. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC01572 is a Novel Prognostic Biomarker and Therapeutic Target in Lung Adenocarcinoma.
    Title: LINC01572 is a Novel Prognostic Biomarker and Therapeutic Target in Lung Adenocarcinoma.
  2. A genome-wide association study finds genetic variants associated with neck or shoulder pain in UK Biobank.
    Title: A genome-wide association study finds genetic variants associated with neck or shoulder pain in UK Biobank.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • AC004158.2, DKFZp686P21234

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126330.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009075, AL525401, AL706640, BX327638, BX371395

  2. NR_159370.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004158, AC010748, AC092289
    Related
    ENST00000662171.1

  3. NR_159371.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004158, AC010748

  4. NR_159372.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004158, AC010748, AC092289

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    72280902..72664970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    78097218..78481445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases