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LINC02449 long intergenic non-protein coding RNA 2449 [ Homo sapiens (human) ]

Gene ID: 101927905, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02449provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2449provided by HGNC
Primary source
HGNC:HGNC:53381
See related
Ensembl:ENSG00000215241 AllianceGenome:HGNC:53381
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 2.5), brain (RPKM 2.4) and 25 other tissues See more
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Genomic context

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See LINC02449 in Genome Data Viewer
Location:
12p13.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (8235415..8242564)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (8249487..8256637)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (8388011..8395160)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:8375857-8377056 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5931 Neighboring gene family with sequence similarity 90 member A1 Neighboring gene ALG1 like 10, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:8390159-8390659 Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4209 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4210 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4211 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4212 Neighboring gene uncharacterized LOC112268090 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4213 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:8396767-8397266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:8404422-8404982 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:8432901-8433710 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:8437184-8438383 Neighboring gene uncharacterized LOC107987171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5932 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:8472091-8472950

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • DKFZp434B192

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120454.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC092111

  2. NR_120455.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and its 3' terminal exon extends past a splice site used in in variant 1, resulting in a shorter transcript.
    Source sequence(s)
    AC092111
    Related
    ENST00000304751.9

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    8235415..8242564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    8249487..8256637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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