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LINC01153 long intergenic non-protein coding RNA 1153 [ Homo sapiens (human) ]

Gene ID: 101927889, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01153provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1153provided by HGNC
Primary source
HGNC:HGNC:49495
See related
Ensembl:ENSG00000227143 AllianceGenome:HGNC:49495
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10q26.12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (121178537..121185966)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (122074688..122082115)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902516 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:122872407-122873606 Neighboring gene uncharacterized LOC124902515 Neighboring gene uncharacterized LOC105378522 Neighboring gene ribosomal protein L19 pseudogene 16 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:122918427-122919626 Neighboring gene uncharacterized LOC105378523 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_10514 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:123048706-123049666 Neighboring gene MPRA-validated peak1116 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:123099460-123100020 Neighboring gene MPRA-validated peak1117 silencer Neighboring gene RN7SK pseudogene 167

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2. Wu Y, et al. Hum Mol Genet, 2014 Feb 15. PMID 24105470, Free PMC Article
  2. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. Fox CS, et al. PLoS Genet, 2012. PMID 22589738, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.
EBI GWAS Catalog
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    121178537..121185966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_246197.3 RNA Sequence

    Related
    ENST00000429809.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    122074688..122082115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081128.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases