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LINC01689 long intergenic non-protein coding RNA 1689 [ Homo sapiens (human) ]

Gene ID: 101927869, updated on 10-Oct-2023

Summary

Official Symbol
LINC01689provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1689provided by HGNC
Primary source
HGNC:HGNC:52476
See related
Ensembl:ENSG00000224832 AllianceGenome:HGNC:52476
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
21q21.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (24304550..24321377, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (22662701..22679529, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (25676863..25693690, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:25184373-25185572 Neighboring gene uncharacterized LOC105372750 Neighboring gene MPRA-validated peak4384 silencer Neighboring gene vomeronasal 2 receptor 20 pseudogene Neighboring gene MPRA-validated peak4387 silencer Neighboring gene MPRA-validated peak4389 silencer Neighboring gene long intergenic non-protein coding RNA 1684 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61838 Neighboring gene MPRA-validated peak4391 silencer Neighboring gene meiotic recombination hotspot A Neighboring gene long intergenic non-protein coding RNA 1692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18302 Neighboring gene uncharacterized LOC107985516

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109963.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000469, BC043533
    Related
    ENST00000416218.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    24304550..24321377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    22662701..22679529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)