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LNCATV lncRNA negative regulator of antiviral signaling [ Homo sapiens (human) ]

Gene ID: 101927851, updated on 10-Oct-2023

Summary

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Official Symbol
LNCATVprovided by HGNC
Official Full Name
lncRNA negative regulator of antiviral signalingprovided by HGNC
Primary source
HGNC:HGNC:54478
See related
Ensembl:ENSG00000238005
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1q42.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (234957342..234963999, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (234348042..234354701, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (235093089..235099746, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2770 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2771 Neighboring gene Sharpr-MPRA regulatory region 4610 Neighboring gene Sharpr-MPRA regulatory region 12865 Neighboring gene RNY4 pseudogene 16 Neighboring gene GATA motif-containing MPRA enhancer 94/95 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:235017825-235017961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2772 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:235034177-235035114 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:235048721-235049466 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:235049467-235050211 Neighboring gene RNA, 7SL, cytoplasmic 668, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:235053443-235054122 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:235056123-235056622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2773 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:235067947-235068447 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:235098512-235099711 Neighboring gene long intergenic non-protein coding RNA 2971 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2778 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1982 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1983 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2779 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:235115282-235115785 Neighboring gene long intergenic non-protein coding RNA 3108 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr1:235122747-235123286 and GRCh37_chr1:235122207-235122746 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:235123287-235123826 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:235133684-235134883 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2780 Neighboring gene Sharpr-MPRA regulatory region 4658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2784 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2788 Neighboring gene Sharpr-MPRA regulatory region 5019 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2789 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:235191005-235191504 Neighboring gene long intergenic non-protein coding RNA 1348

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Human Long Non-coding RNA LncATV Promotes Virus Replication Through Restricting RIG-I-Mediated Innate Immunity. Fan J, et al. Front Immunol, 2019. PMID 31379885, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125945.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC016972
    Related
    ENST00000418557.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    234957342..234963999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    234348042..234354701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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