U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101927829 uncharacterized LOC101927829 [ Homo sapiens (human) ]

Gene ID: 101927829, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC101927829
Gene description
uncharacterized LOC101927829
See related
Ensembl:ENSG00000231304
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101927829 in Genome Data Viewer
Location:
3p24.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (20342468..20350928)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (20351079..20359538)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (20383960..20392420)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14136 Neighboring gene RNY4 pseudogene 22 Neighboring gene NANOG hESC enhancer GRCh37_chr3:20312862-20313363 Neighboring gene MPRA-validated peak4563 silencer Neighboring gene RNA, U6 small nuclear 822, pseudogene Neighboring gene MPRA-validated peak4564 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:20353005-20353506 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:20355404-20355578 Neighboring gene MPRA-validated peak4566 silencer Neighboring gene MPRA-validated peak4565 silencer Neighboring gene RNA, U6 small nuclear 815, pseudogene Neighboring gene MPRA-validated peak4567 silencer Neighboring gene Sharpr-MPRA regulatory region 10717 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67891 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67940 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67948 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67959 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:20832001-20832502 Neighboring gene MPRA-validated peak4571 silencer Neighboring gene uncharacterized LOC107986068

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Clone Names

  • AC107622.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110814.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107622, BC041892
    Related
    ENST00000455626.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    20342468..20350928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187535.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    69053..77513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    20351079..20359538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases