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LOC101927817 uncharacterized LOC101927817 [ Homo sapiens (human) ]

Gene ID: 101927817, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101927817
Gene description
uncharacterized LOC101927817
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16q24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (89430918..89454494)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (95511519..95535077)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (89497326..89520902)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain containing 11 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89361804-89362649 Neighboring gene keratin-associated protein 5-2-like Neighboring gene uncharacterized LOC105371414 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89372939-89373605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89379263-89380057 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89381655-89382246 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89382247-89382838 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89383431-89384022 Neighboring gene uncharacterized LOC128462377 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89384023-89384614 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89385876-89386388 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89386389-89386902 Neighboring gene uncharacterized LOC100287036 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7898 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:89389210-89390409 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:89392122-89393321 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89396817-89397340 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7899 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:89403267-89403470 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89423346-89424232 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89424233-89425119 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11403 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11404 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:89427458-89428657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11407 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11408 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89435313-89436300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89436301-89437288 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7900 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89441829-89442329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89447954-89448462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89448463-89448970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89449335-89450009 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89450010-89450683 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89461342-89462280 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89467796-89468296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89468297-89468797 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11409 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89485981-89486482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89486483-89486982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89489639-89490139 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7901 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89499323-89500095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7902 Neighboring gene RNA, U6 small nuclear 430, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89520035-89520855 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89524753-89525254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89525255-89525754 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89529183-89530171 Neighboring gene CMPK1 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89553656-89554156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89554157-89554657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11413 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:89555515-89556028 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:89556029-89556543 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7906 Neighboring gene uncharacterized LOC101930112 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7907 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7908 Neighboring gene uncharacterized LOC101927863

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110931.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK097694, DB062121

  2. NR_110932.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AK097694, DB029962, DB062121

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    89430918..89454494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    95511519..95535077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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