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CLN8-AS1 CLN8 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927752, updated on 8-Nov-2023

Summary

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Official Symbol
CLN8-AS1provided by HGNC
Official Full Name
CLN8 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55523
See related
Ensembl:ENSG00000253982 AllianceGenome:HGNC:55523
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 5.6), kidney (RPKM 5.5) and 25 other tissues See more
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Genomic context

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Location:
8p23.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (1761963..1764584, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (1540630..1543273, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (1710129..1712750, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene DNA fragmentation factor subunit alpha pseudogene Neighboring gene uncharacterized LOC105377778 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:1703542-1704741 Neighboring gene CLN8 transmembrane ER and ERGIC protein Neighboring gene Sharpr-MPRA regulatory region 8503 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:1719100-1719280 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:1726288-1727208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1731879-1732378 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:1733452-1733574 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:1748222-1749421 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:1750577-1751237 Neighboring gene microRNA 3674 Neighboring gene uncharacterized LOC105377779 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1762347-1762848

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CTD-2336O2.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134302.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC100810, AI590306, BI761958, BI860307, HY107716

  2. NR_134303.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes an alternate 5' exon compared to variant 1.
    Source sequence(s)
    AC100810, AW003093, BI761958, BI860307
    Related
    ENST00000517959.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    1761963..1764584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187680.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    174621..177242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    1540630..1543273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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