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LINC02322 long intergenic non-protein coding RNA 2322 [ Homo sapiens (human) ]

Gene ID: 101927729, updated on 10-Oct-2023

Summary

Official Symbol
LINC02322provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2322provided by HGNC
Primary source
HGNC:HGNC:53241
See related
Ensembl:ENSG00000258556 AllianceGenome:HGNC:53241
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

Location:
14q23.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (60323196..60323907)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (54529491..54530202)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (60789914..60790625)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8473 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:60715285-60716013 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5810 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1A Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:60748999-60750198 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:60782171-60783050 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:60783051-60783930 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:60785365-60785909 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8477 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8478 Neighboring gene GNRHR2 pseudogene 1 Neighboring gene RBM8A pseudogene 1 Neighboring gene chromosome 14 open reading frame 39 Neighboring gene spalt like transcription factor 4 pseudogene 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146481.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132778
    Related
    ENST00000554773.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    60323196..60323907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    54529491..54530202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)