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LINC01644 long intergenic non-protein coding RNA 1644 [ Homo sapiens (human) ]

Gene ID: 101927722, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01644provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1644provided by HGNC
Primary source
HGNC:HGNC:52431
See related
Ensembl:ENSG00000218357 AllianceGenome:HGNC:52431
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LL22NC03-75H12.2
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
22q13.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (47461299..47487111, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (47952541..47978350, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (47857048..47882860, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 22A Neighboring gene uncharacterized LOC124905140 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr22:47550202-47551401 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47560499-47561076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47566897-47567396 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr22:47571494-47572693 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47588168-47588668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47608371-47608872 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47643595-47644094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47677397-47677897 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:47724406-47725605 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19269 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:47765496-47766695 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47771462-47771962 Neighboring gene uncharacterized LOC339685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47803821-47804321 Neighboring gene Sharpr-MPRA regulatory region 13395 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47945374-47946198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47954815-47955315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47965246-47965746 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:47983860-47985059 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48021971-48022470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48024594-48025473 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48025474-48026352 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:48055109-48055612 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:48055613-48056116 Neighboring gene long intergenic non-protein coding RNA 898 Neighboring gene Sharpr-MPRA regulatory region 4711 Neighboring gene NANOG hESC enhancer GRCh37_chr22:48123351-48123882 Neighboring gene epigenetically induced MYC interacting lncRNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48135325-48135934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48171821-48172322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48172323-48172822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48209585-48210084

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109967.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC037972
    Related
    ENST00000405369.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    47461299..47487111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    47952541..47978350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases