U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01029 long intergenic non-protein coding RNA 1029 [ Homo sapiens (human) ]

Gene ID: 101927715, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC01029provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1029provided by HGNC
Primary source
HGNC:HGNC:49015
See related
Ensembl:ENSG00000265843 AllianceGenome:HGNC:49015
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC01029 in Genome Data Viewer
Location:
18q23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (77971294..77993727, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (78203119..78225577, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (75683250..75705683, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985129 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75465232-75465784 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75474392-75475106 Neighboring gene MPRA-validated peak3188 silencer Neighboring gene VISTA enhancer hs1020 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:75535169-75536368 Neighboring gene VISTA enhancer hs1186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75577351-75577852 Neighboring gene RNA, 5S ribosomal pseudogene 461 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75609611-75610121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75611971-75612487 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75617943-75618714 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:75629975-75630209 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50500 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75682747-75683315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75714815-75715343 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75717895-75718640 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75718641-75719385 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75791151-75791652 Neighboring gene RNA, U6 small nuclear 655, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75842390-75842890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75842891-75843391 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:75844334-75845533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75848151-75848652 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:75898411-75899054 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75899055-75899698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75899699-75900342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75934781-75935281 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:75936086-75937285 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75967979-75968517 Neighboring gene VISTA enhancer hs634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76027952-76028452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76028453-76028953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76056703-76057204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76057205-76057704 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:76254093-76255292 Neighboring gene uncharacterized LOC105372219

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104127.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134978
    Related
    ENST00000668585.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    77971294..77993727 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    78203119..78225577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases