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LOC101927709 uncharacterized LOC101927709 [ Homo sapiens (human) ]

Gene ID: 101927709, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101927709
Gene description
uncharacterized LOC101927709
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101927709 in Genome Data Viewer
Location:
2q14.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (118599783..118602966, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (119032602..119035785, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (119357359..119360542, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985815 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:119188381-119189580 Neighboring gene uncharacterized LOC105373579 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:119234661-119235196 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:119247265-119247825 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:119247826-119248385 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:119287395-119287936 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:119401495-119402281 Neighboring gene Sharpr-MPRA regulatory region 6388 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11897 Neighboring gene CRISPRi-validated cis-regulatory element chr2.4272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:119590580-119591348 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:119599819-119600399 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr2:119602243-119602892 and GRCh37_chr2:119602893-119603542 Neighboring gene long intergenic non-protein coding RNA 1956 Neighboring gene engrailed homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110272.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018686

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    118599783..118602966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    119032602..119035785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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