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LINC01744 long intergenic non-protein coding RNA 1744 [ Homo sapiens (human) ]

Gene ID: 101927683, updated on 17-Sep-2024

Summary

Official Symbol
LINC01744provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1744provided by HGNC
Primary source
HGNC:HGNC:52532
See related
Ensembl:ENSG00000236497 AllianceGenome:HGNC:52532
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.6) See more
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Genomic context

See LINC01744 in Genome Data Viewer
Location:
1q42.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (232727254..232742715, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (232113212..232129090, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (232863000..232878461, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1211, pseudogene Neighboring gene long intergenic non-protein coding RNA 1745 Neighboring gene uncharacterized LOC107983960 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:232884037-232885236 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:232940957-232941554 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:232941555-232942151 Neighboring gene uncharacterized LOC101927711 Neighboring gene microtubule associated protein 10 Neighboring gene RNA, U1 small nuclear 74, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110683.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK093200
    Related
    ENST00000457698.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    232727254..232742715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    232113212..232129090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)