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LINC02411 long intergenic non-protein coding RNA 2411 [ Homo sapiens (human) ]

Gene ID: 101927637, updated on 10-Oct-2023

Summary

Official Symbol
LINC02411provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2411provided by HGNC
Primary source
HGNC:HGNC:53340
See related
Ensembl:ENSG00000256022 AllianceGenome:HGNC:53340
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.9) See more
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Genomic context

Location:
12q24.32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (127631269..127636467, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (127659137..127664333, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (128115814..128121012, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370067 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:128043830-128045029 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:128052884-128053388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:128053389-128053893 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:128080981-128081480 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:128091742-128092638 Neighboring gene uncharacterized LOC124903051 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:128107825-128109024 Neighboring gene transmembrane protein 132B pseudogene Neighboring gene Sharpr-MPRA regulatory region 13155 Neighboring gene uncharacterized LOC105370068 Neighboring gene uncharacterized LOC105370069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:128204606-128205106

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120451.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025160, AI016783, BU567943, DB036062
    Related
    ENST00000544251.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    127631269..127636467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    127659137..127664333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)