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DDHD1-DT DDHD1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101927620, updated on 22-Oct-2024

Summary

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Official Symbol
DDHD1-DTprovided by HGNC
Official Full Name
DDHD1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55441
See related
Ensembl:ENSG00000258731 AllianceGenome:HGNC:55441
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.8) See more
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Genomic context

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See DDHD1-DT in Genome Data Viewer
Location:
14q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (53153354..53157528)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (47361326..47365496)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (53620072..53624246)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit B3 pseudogene 3 Neighboring gene DDHD domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8400 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8401 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5752 Neighboring gene uncharacterized LOC105370502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8403 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5753 Neighboring gene NANOG hESC enhancer GRCh37_chr14:53726964-53727525 Neighboring gene Sharpr-MPRA regulatory region 9489 Neighboring gene uncharacterized LOC105370504 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:53822218-53822978 Neighboring gene VISTA enhancer hs1151 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:53858219-53859418 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:53924665-53925864 Neighboring gene VISTA enhancer hs1629 Neighboring gene uncharacterized LOC124903316 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:54074633-54075832

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110062.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356020
    Related
    ENST00000554235.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    53153354..53157528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    47361326..47365496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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