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RNF139-DT RNF139 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101927612, updated on 10-Oct-2023

Summary

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Official Symbol
RNF139-DTprovided by HGNC
Official Full Name
RNF139 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48940
See related
Ensembl:ENSG00000245149 AllianceGenome:HGNC:48940
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RNF139-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8q24.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (124462493..124474563, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (125595191..125607270, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (125474734..125486804, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene transmembrane protein 65 Neighboring gene MPRA-validated peak7161 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19509 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19510 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19511 Neighboring gene Sharpr-MPRA regulatory region 2045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27881 Neighboring gene MPRA-validated peak7162 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:125440961-125441462 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:125443461-125444276 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:125452571-125453070 Neighboring gene tRNA methyltransferase 12 homolog Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:125483735-125484236 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27882 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:125486486-125487030 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:125487031-125487576 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:125487577-125488120 Neighboring gene ring finger protein 139 Neighboring gene TatD DNase domain containing 1 Neighboring gene microRNA 6844

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • RNF139 antisense RNA 1 (head to head)

Clone Names

  • FLJ90571, DKFZp781F0756

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108047.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC090192, AC090198, CR933665
    Related
    ENST00000499418.2

  2. NR_108048.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains multiple differences at both the 5' and 3' ends, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC090198

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    124462493..124474563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791784.1 Reference GRCh38.p14 PATCHES

    Range
    1..9152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    125595191..125607270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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