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LINC02141 long intergenic non-protein coding RNA 2141 [ Homo sapiens (human) ]

Gene ID: 101927580, updated on 10-Oct-2023

Summary

Official Symbol
LINC02141provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2141provided by HGNC
Primary source
HGNC:HGNC:53001
See related
Ensembl:ENSG00000261807 AllianceGenome:HGNC:53001
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
16q21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (59855353..60053973)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (65647204..65845579)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (59889257..60087877)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene double homeobox A pseudogene 11 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:59843104-59843636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:59843637-59844168 Neighboring gene apolipoprotein O pseudogene 5 Neighboring gene uncharacterized LOC105371300 Neighboring gene uncharacterized LOC105371299 Neighboring gene NOP58 ribonucleoprotein homolog (yeast) pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:60112162-60113065 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:60114633-60115134 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:60117794-60118510 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:60251661-60252265 Neighboring gene uncharacterized LOC101927605 Neighboring gene nuclear pore associated protein 1 like (pseudogene) Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:60493067-60493566 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:60572390-60572596 Neighboring gene glyceronephosphate O-acyltransferase pseudogene

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110917.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009094, AC092350
    Related
    ENST00000568279.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    59855353..60053973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    65647204..65845579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)