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LINC01797 long intergenic non-protein coding RNA 1797 [ Homo sapiens (human) ]

Gene ID: 101927577, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01797provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1797provided by HGNC
Primary source
HGNC:HGNC:52587
See related
Ensembl:ENSG00000237179 AllianceGenome:HGNC:52587
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in salivary gland (RPKM 1.2), testis (RPKM 0.9) and 11 other tissues See more
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Genomic context

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See LINC01797 in Genome Data Viewer
Location:
2p14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (66697030..66703227, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (66705972..66712183, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (66924162..66930359, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Meis homeobox 1 Neighboring gene uncharacterized LOC124900511 Neighboring gene HHc2:066650 enhancer in MEIS1 Neighboring gene HHc2:066659 enhancer in MEIS1 Neighboring gene HHc2:067135 enhancer in MEIS1 Neighboring gene HHc2:067347 enhancer downstream of MEIS1 Neighboring gene long intergenic non-protein coding RNA 1798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:66874822-66875386 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:66875387-66875950 Neighboring gene VISTA enhancer hs1244 Neighboring gene DNA methyltransferase 3A pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 11234 Neighboring gene Sharpr-MPRA regulatory region 6757 Neighboring gene long intergenic non-protein coding RNA 1799 Neighboring gene long intergenic non-protein coding RNA 1628

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC007392.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110264.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC007392, CD557966
    Related
    ENST00000433432.1

  2. NR_110265.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC007392, CD557966, HY009512

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    66697030..66703227 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    66705972..66712183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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