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LOC101927434 uncharacterized LOC101927434 [ Homo sapiens (human) ]

Gene ID: 101927434, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101927434
Gene description
uncharacterized LOC101927434
See related
Ensembl:ENSG00000234953
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p31.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (81513880..81557702, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (81351439..81395272, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (81979565..82023387, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor L2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1240 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene 14 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:81923876-81924376 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:81935555-81936062 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:81936063-81936570 Neighboring gene Sharpr-MPRA regulatory region 8606 Neighboring gene ARID3B pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:82009398-82010005 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:82013019-82013798 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1007 Neighboring gene ribosomal protein S20 pseudogene 7 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:82147966-82148534 Neighboring gene ST13, Hsp70 interacting protein pseudogene 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125943.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX092247
    Related
    ENST00000443939.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    81513880..81557702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    81351439..81395272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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