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LOC101927421 uncharacterized LOC101927421 [ Homo sapiens (human) ]

Gene ID: 101927421, updated on 10-Oct-2023

Summary

Gene symbol
LOC101927421
Gene description
uncharacterized LOC101927421
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
5q23.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (125036831..125367734)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (125553160..125884001)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (124372524..124703427)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901055 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:124307845-124308784 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:124315550-124316204 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:124316205-124316858 Neighboring gene uncharacterized LOC105379158 Neighboring gene VISTA enhancer hs1375 Neighboring gene MPRA-validated peak5451 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:124338542-124339300 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16280 Neighboring gene MPRA-validated peak5452 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr5:124514364-124514581 Neighboring gene VISTA enhancer hs1643 Neighboring gene high mobility group box 1 pseudogene 22 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:124683978-124684543 Neighboring gene NANOG hESC enhancer GRCh37_chr5:124684958-124685473 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:124699839-124700406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:124700407-124700973 Neighboring gene VISTA enhancer hs1371 Neighboring gene RN7SK pseudogene 117 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:124747359-124747858 Neighboring gene uncharacterized LOC124901056 Neighboring gene long intergenic non-protein coding RNA 2240 Neighboring gene Sharpr-MPRA regulatory region 7820 Neighboring gene MPRA-validated peak5453 silencer Neighboring gene ribosomal protein S3A pseudogene

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Genetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids.
EBI GWAS Catalog
Integrated Genome-wide Association, Coexpression Network, and Expression Single Nucleotide Polymorphism Analysis Identifies Novel Pathway in Allergic Rhinitis.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109882.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA758211, AC109471, BX089050

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    125036831..125367734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187549.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    11034..88269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    125553160..125884001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)