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LINC02681 long intergenic non-protein coding RNA 2681 [ Homo sapiens (human) ]

Gene ID: 101927419, updated on 10-Oct-2023

Summary

Official Symbol
LINC02681provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2681provided by HGNC
Primary source
HGNC:HGNC:54175
See related
Ensembl:ENSG00000229649 AllianceGenome:HGNC:54175
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
10q24.32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (101252821..101263550, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (102136169..102146902, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (103012578..103023307, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene LBX1 antisense RNA 1 Neighboring gene ladybird homeobox 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102995795-102996717 Neighboring gene MPRA-validated peak1078 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:103020107-103020894 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:103026397-103026935 Neighboring gene uncharacterized LOC124902597 Neighboring gene uncharacterized LOC105378453 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:103044869-103045778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:103045779-103046686

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120621.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133387
    Related
    ENST00000422661.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    101252821..101263550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    102136169..102146902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)