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LINC01782 long intergenic non-protein coding RNA 1782 [ Homo sapiens (human) ]

Gene ID: 101927411, updated on 17-Sep-2024

Summary

Official Symbol
LINC01782provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1782provided by HGNC
Primary source
HGNC:HGNC:52572
See related
Ensembl:ENSG00000267204 AllianceGenome:HGNC:52572
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01782 in Genome Data Viewer
Location:
19q13.11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (32102088..32105916, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (34620689..34624507, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (32592994..32596822, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1837 Neighboring gene long intergenic non-protein coding RNA 1533 Neighboring gene uncharacterized LOC105376899 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:32589463-32590283 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr19:32594598-32595797 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:32615176-32616087 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10477 Neighboring gene RNA, 5S ribosomal pseudogene 472 Neighboring gene uncharacterized LOC124904688

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110694.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011518, BC033328
    Related
    ENST00000591212.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    32102088..32105916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    34620689..34624507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)