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AFTPH-DT AFTPH divergent transcript [ Homo sapiens (human) ]

Gene ID: 101927402, updated on 10-Oct-2023

Summary

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Official Symbol
AFTPH-DTprovided by HGNC
Official Full Name
AFTPH divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:52788
See related
Ensembl:ENSG00000260101 AllianceGenome:HGNC:52788
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2p14
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (64522189..64524155, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (64531627..64533593, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (64749323..64751289, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene LGALSL divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11554 Neighboring gene galectin like Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:64711199-64712398 Neighboring gene Sharpr-MPRA regulatory region 8770 Neighboring gene long intergenic non-protein coding RNA 1805 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15893 Neighboring gene H3K27ac hESC enhancers GRCh37_chr2:64751340-64751840 and GRCh37_chr2:64751841-64752341 Neighboring gene uncharacterized LOC105374773 Neighboring gene microRNA 4434 Neighboring gene aftiphilin Neighboring gene RNA, U6 small nuclear 100, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136167.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008074, BC035180
    Related
    ENST00000561559.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    64522189..64524155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    64531627..64533593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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